Regular BLAST

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Program blastn blastp blastx tblastn tblastx Database Rice EST Plant EST REDB Full-length cDNA Japanese Rice FL cDNA RIKEN Arabidopsis FL cDNA Minghui 63 Pseudo-sequences (IRRI OryzaSNP project, 2007.11) Zhenshan 97 Pseudo-sequences (IRRI OryzaSNP project, 2007.11) NCBI Rice Genome Sequences (2005.4.6) MSU rice pseudomolecule release 7.0/Os-Nipponbare-Reference-IRGSP-1.0 (Genomic Sequence, 2011) MSU/TIGR Rice Pseudomolecule Release 6.0/6.1 (Genomic Sequence, 2009) MSU/TIGR Rice Pseudomolecule Release 4.0/5.0 (Genomic Sequence, 2006-2007) MSU/TIGR Rice Pseudomolecule Release 5.0 (Amino Acid Sequence, 2007.01.24) MSU/TIGR Rice Pseudomolecule Release 3.0 (Genomic Sequence, 2004.12.30) OMAP BAC ends 9311 ChrAll Nucleotide (From BGI) kasalath ChrAll Nucleotide (From rice50ks) Rice Mutant Database Rice Repeats Rice unigene E.coli NT Yeast NT Patent NT PDB NT nt Plant Genome Pant Gss Plant Promoters Prokaryote Vector nr Swissprot Trembl E.coli AA Yeast AA Patent AA PDB AA Gene Ontology

Enter sequence below in FASTA format

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Expect 0.0001 0.01 1 10 100 1000    Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment

Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF

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