Readseq: Interconvert sequence formats |
|
The brief usage of options is as follows. The ``[ ]'' denote optional parts of the syntax: options -a[ll] select All sequences -degap[=-] remove gap symbols -i[tem=2,3,4] select Item number(s) from several -l[ist] List sequences only -r[everse] change to Reverse-complement Pretty format options: -wid[th]=# sequence line width -tab=# left indent -col[space]=# column space within sequence line on output -gap[count] count gap chars in sequence numbers -nameleft, -nameright[=#] name on left/right side [=max width] -nametop name at top/bottom -numleft, -numright seq index on left/right side -numtop, -numbot index on top/bottom -match[=.] use match base for 2..n species -inter[line=#] blank line(s) between sequence blocks * Readseq reads and writes nucleic/protein sequences in various formats. Data files may have multiple sequences. Readseq, copyright 1990 by D.G. Gilbert, is particularly useful as it automatically detects many sequence formats, and interconverts among them. |